Vegetable Diseases to Scout for: Southern Blight

Southern blight, or basal stem rot as it is sometimes called, most commonly affects tomato, pepper, cucumbers, beans, and cabbage, but has a very wide host range and can infect many crops. The disease can occur in any system where plants are grown in natural soil. Prevention, early identification, and management will help reduce plant and yield losses.

Here are the symptoms and signs to look for, preventative tactics, and brief suggestions on how to treat crops once disease is confirmed.

Cause & Disease Development

Southern blight is caused by the fungal pathogen, Sclerotium rolfsii. This pathogen overwinters in crop residues or in soil as sclerotia (small, round fungal overwintering structures). These sclerotia are smaller than the dark brown sclerotia developed by the timber rot/ white mold pathogen. Sclerotia enable the fungus to remain viable for many years in soils, even through adverse conditions. Southern blight is favored by high temperatures and humidity. Disease severity increases when undecomposed organic matter is left on and in the soil.


The first symptom of southern blight is a sudden wilting of foliage, which is followed by yellowing of leaves and stems/branches that turn brown (Figure 1). Plant death occurs as a result of stem or crown decay at the soil level. Infected plant parts may be covered by a white, thread-like mycelium (fungal body) (Figure 2). Over time, small, round structures, called sclerotia, appear within the mycelium and on the stem (Figure 2). Sclerotia first appear white, but then darken to a brown or orange color. When fully developed, each sclerotium is about the size of a mustard seed.

Figure 1: Plants affected by southern blight exhibit leaf yellowing and stems and branches turn brown. (Photo: Kenny Seebold, University of Kentucky)

Figure 2: White mycelium may develop on infected plant parts. Within the mycelium, small round sclerotia develop. (Photo: Emily Pfeufer, University of Kentucky)


Cultural practices:

  • Remove and destroy infected plants.
  • Do not plant in fields with a history of southern blight.
  • In gardens or on a small scale, apply a physical barrier such as wrapping aluminum foil around the lower stem and crown of the plant.
  • On larger scales, bury sclerotia by deep tilling fields, then maintain as fallow or plant non-host cover crops for several seasons.
  • Soil solarization for at least 6 weeks may reduce disease incidence in the following growing season.

Chemical approaches:

Southern blight is extremely difficult to manage once it becomes a problem in field or greenhouse soils. The pathogen has nearly 1900 hosts, and can even infect common rotational crops like corn, soybean, sorghum, and rye (Farr and Rossman, USDA-ARS). Following deep tillage of an affected crop, it is important to maintain plant-free fallow periods using herbicide applications to keep the pathogen from increasing on common weeds. Ideally this would occur over multiple seasons. For growers under constraints for rotational fields and/or in high-value production areas, soil fumigation by a licensed company may need to be considered.

If transplanting into a field that has had southern blight issues in the more distant past, an at-transplant treatment of Blocker 4F may be used in certain crops’ transplant water. Post-transplant, soil-directed applications of select labeled fungicides in FRAC groups 7 or 11 are recommended to continue to suppress disease through the season. For organic growers, several biological products are labeled for southern blight management, but efficacy data is lacking in most cases.

As always, all label recommendations must be followed when applying chemicals to crops. In particular, pay close attention to pre-harvest intervals.


  • Farr, D.F., & Rossman, A.Y. Fungal Databases(Systematic Mycology and Microbiology Laboratory, ARS, USDA)
  • Home Vegetable Gardening (ID-128)
  • IPM Scouting Guide for Common Problems of Cucurbit Crops in Kentucky (ID-91)
  • IPM Scouting Guide for Common Problems of Solanaceous Crops in Kentucky (ID-172)
  • Soil Solarization for High Tunnels (Hort Fact – 7003)
  • Southern Blight (PPFS-VG-03)
  • Sustainable Disease Management of Cucurbit Crops in the Home Garden (PPFS-VG-19)
  • Sustainable Disease Management of Solanaceous Crops in the Home Garden (PPFS-VG-21)
  • Vegetable Production Guide for Commercial Growers (ID-36)

By: Kim Leonberger, Extension Associate and Emily Pfeufer, Extension Plant Pathologist

Posted in Vegetables